nuxt-galaxy

GaaS Monorepo

Overview

This monorepo contains all projects and packages related to GAAS (Galaxy As a Service), which provides tooling and interfaces for the Galaxy Project.

The Galaxy Project is an open-source platform for:

• Data-intensive biomedical research
• Reproducible scientific workflows
• Web-based analysis and visualization tools
• REST API for programmatic interactions

Repository Structure

The monorepo consists of three main packages:

blendtype

• TypeScript client for Galaxy Project REST API
• Provides type-safe interactions with Galaxy servers
• Similar to BioBlend but with full TypeScript support
• Handles authentication and workflow invocations
• Built to be tree-shakeable and modular

nuxt-galaxy

• Nuxt module that integrates with Galaxy Project
• Leverages blendtype for Galaxy API communication
• Simplifies Galaxy integration in Nuxt applications
• Features:
  • Authentication handling and data persistence with Supabase
  • Workflow execution management
  • Workflow monitoring

gaas-ui

• Nuxt layer built on top of nuxt-galaxy
• Provides pre-built pages and layouts
• Ready-to-use components for Galaxy interactions
• UI components for:
  • Dataset browsers
  • Job monitoring dashboards
  • Tool interfaces
• A wiki built on @nuxt/content:
  • Markdown pages with full-text search and navigation
  • DOI citations, with a bibliography appended to each page
  • TypeScript schema validation for content consistency

Resources

• Galaxy Project Documentation
• Galaxy API Documentation
• Galaxy Training Network
• Galaxy Community Hub

Contributing

Please see the contributing guidelines in each package for development setup and contribution workflows.

License

GaaS is MIT licensed, copyright Institut Pasteur: see LICENSE. Each published package ships this same file. ADR 0007 records why Institut Pasteur holds the copyright while Rémi Planel is named as author.